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Where Do Supplements Fit Into A Healing Diet?

With nutrient density and a balanced diet as the priority of the AIP, you might be confused about whether you should also be taking supplements or not.

I’ve had many people tell me they MUST supplement because they’re cutting eggs and dairy and what ever else out of their diet while on the AIP … but in reality this doesn’t have to be the case!

If you’re concerned about a certain deficiency, I encourage you to do a quick Google search (search: “What foods are rich in X…”) to find out what foods are rich in that vitamin/nutrient, or better yet, check out my post – “Eat the Rainbow“ and consider delving into “Guide to Nutrivore” or “Nutrivore: The Radical New Science for Getting the Nutrients You Need from the Food You Eat” by Dr. Sarah Ballantyne, one of the pioneers of the Autoimmune Protocol. I think you’ll be shocked by how much you can get just from eating the RIGHT fruits, vegetables and proteins!

That said, I’m not saying that supplements are a no-no on the AIP, that’s not the case at all. Many people may be in nutritional crisis due to their medical condition and they may need to supplement in addition to using the AIP to heal (this was and is the case for me). Most IMPORTANTLY, always follow the guidelines of your doctor, functional medicine practitioner, AIP coach or nutritional consultant – click here for where to find help.

Don’t miss these articles by Autoimmune Wellness :

5 Reasons You Should Get Your Nutrients from Real Food Before Supplements – learn about affordability, the power of real food over supplements, when supplements make sense and so much more!

Supplements & The AIP – learn how to evaluate supplements, whether you need them and which supplements might be of benefit to you

Hidden Gluten, Grains and Nightshades in Meds and Supplements – this is an important topic to consider if you’re taking supplements or medications on the AIP

AIP Trouble Shooting

Before we head into more on supplementation, I want to offer this one thought … if you feel your AIP elimination diet isn’t working for you, and reintroductions just aren’t going well, resist the urge to eliminate more and more foods. Our goal is to be adding foods back into our diet, not removing more and potentially creating disordered eating.

If you’ve given the AIP elimination diet a serious go an are struggling, please check out my resource on “Digging Deeper & Trouble Shooting the AIP.”

What Should I Take?

The “I” in that question is THE most important word … supplements are completely unique to each individual. There is NO one-size fits all approach to supplementation, just like there’s no one-size fits all AIP.

My Favorite Supplement Organizer! Large enough for fish oils and more.

There is NO one regime that works for every person with Hashimoto’s or Graves, no guaranteed standard set of supplements someone should take if they suffer from Chrons, Fibromyalgia, MS, RA, etc., and so on. Resist the urge to be a copycat – unfortunately, it’s not as easy as copying from one person’s regime to your own. This can be especially true with things like probiotics (folks with SIBO and digestive disease have special needs – sometimes you don’t even know what your underlying issues are and that makes it trickier again!), and then there’s B vitamins which can be challenging for folks with methylation / detoxification issues, and don’t get me started about anyone dealing with mold exposure issues – things I thought were safe for me are not … and the list goes on and on and on!

Honestly – save yourself some time and stop wasting money on supplements that might not be right for you! If you’re aimlessly taking supplements, or jumping on the latest fad supplement for belly fat, bloating or autoimmune disease, you might simply be creating really expensive urine! That’s right, you heard me … if the supplements aren’t right for you, or your body isn’t absorbing nutrients efficiently, you could just be flushing them and your hard earned cash down the toilet … literally!

That said, supplementation is really something you should work through with an expert, such as a Functional Medicine Practitioner. Seriously consider this – it could save you money AND months or years on your journey to health.

Where Should I Buy My Supplements?

I just mentioned wasting money, none of us want to do that, but more importantly, you want to be sure you’re getting quality supplements. There’s a lot of hubbub lately about fraudulent supplements being sold online from sources like Amazon, so please, buyer beware! If the price is cheap and it seems to good to be true, it likely is.

Beyond that, supplements are scary confusing! There are so many things to watch for when it comes to nutritional ingredients and quality, never mind all the tricky inactive ingredients that may be hiding in your supplements (did you catch that article link above?)! So if you’re feeling confused, whenever possible, enlist a professional who is knowledgeable about the AIP and your diagnosis to assist you with determining the right supplements and best brands for your personal situation.

While I’m not about to recommend any particular product for anyone’s personal situation (DISCLAIMER: I’m not a doctor), I will point you in the right direction to a trusted company that has been recommended by many autoimmune experts. I have personally used Perfect Supplements desiccated liver and organ capsules, collagen and more. I trust their quality offerings so much that I decided to become an affiliate. You can find them here, and you can save money when you use this link and CODE: “AIP10”
Save 20% when you purchase 3 or more Perfect Brand products
Save 25% when you purchase 6 or more Perfect Brand products
Save 10% off EVERY order of ANY brand

(NOTE: Not all products offered by this partner are necessarily AIP – you will still need to do your own research and consult a professional for advice.)

LOOKING for other options? Since I know many people are looking for quality supplements at affordable prices, I’ll share one of my favorite shops – iHerb, and you can save 10% as a new customer or 5% as a returning customer with my referral code “HAN855” (NOTE: I still do a lot of research before purchases – you’ll need to evaluate brands and ingredients on everything you choose). One of the best things about shopping for my supplements online is that it allows me to dig in, compare prices, brands and ingredients before buying. I simply can’t do that buying in a physical store – there’s too much pressure!

FAQ, News

Kombucha & Fermented Foods

Are fermented foods allowed on the AIP?

Short answer? Yes — fermented foods are allowed on the Autoimmune Protocol.

Longer answer? It depends on your body, your gut, and your timing.

Fermented foods are often recommended as part of an AIP-friendly diet because they can support gut health by introducing beneficial bacteria. When things go well, they’re a wonderful addition to your AIP menu. However, I can tell you from experience that not every “gut healing” food is right for everyone (at least in the beginning).

I’ve seen (and experienced) plenty of situations where ferments caused more trouble than help — especially early on.

When Fermented Foods Can Be a Problem

Fermented foods are supposed to be the bees-knees for adding more of the “good guys” to our gastrointestinal arsenal and strengthening our microbiome. Unfortunately, theyr’e not universally tolerated and there are a few reasons they can backfire:

FODMAP content
Drinks like kombucha contain fermentable carbohydrates (FODMAPs). For people dealing with IBS, SIBO, or other digestive issues, those carbs can trigger bloating, pain, and digestive chaos instead of calm.
Wild microbes
Because fermented foods are unpasteurized, they contain live bacteria and yeasts. That’s usually the point — but in some guts, especially those already out of balance, those microbes can feed opportunistic bacteria rather than crowding them out.

In other words, ferments can be amazing… or they can feel like you invited the wrong guests to the party.

How to Add Fermented Foods on AIP (Without Regret)

If you’re considering adding fermented foods to your AIP diet, go slow — painfully slow.

Start with tiny amounts (think a teaspoon, not a serving)
Introduce one ferment at a time
Track symptoms carefully for a few days
Don’t push through reactions hoping your body will “adjust”

If you’re working with a nutritionist or Functional Medicine practitioner, follow their guidance. If not, your symptom journal becomes your best friend.

For many people, simple ferments like sauerkraut or kimchi tend to be easier starting points than kombucha. Fewer variables, fewer surprises.

Still Curious About Fermented Foods on AIP?

Totally fair. Fermented foods raise a lot of questions:

Are all fermented foods AIP-compliant?
What ingredients should you watch for?
Is homemade safer than store-bought?
How much is too much?
How often should you have them?

You’re not alone if this feels overwhelming — it’s a lot to navigate when your gut already feels like it’s running the show.

Learn More From Trusted AIP Resources

If you want to go deeper, these are solid, evidence-based reads from people who live and breathe autoimmune health:

A Practical Guide to Fermented Foods for Autoimmune Disease
Everything You Need to Know About Kombucha (a full article series worth bookmarking)

And if you’re feeling brave enough to try making your own AIP-compliant ferments, hop into our Facebook group and use the search bar. Try terms like “ferment,” “pickle,” “sauerkraut,” or “kombucha” — there’s a treasure trove of real-world experience in there.

Check out one of my favorites – Mom’s Dill Pickles

The Bottom Line

Fermented foods are allowed on AIP.
That doesn’t mean they’re required.
And it definitely doesn’t mean more is better.

Listen to your body, move at your own pace, and remember — healing isn’t a race. It’s more of a very slow, very personal simmer.

FAQ, News

Finding Your Root Cause

Ever feel like efforts to manage your illness are a bit like putting a band-aid on a battleship? That you’re just masking the symptoms and not getting to the bottom of things? I think we’ve all been there at one point or another, and that’s why I want to share this with you today.

While it’s amazing to receive an actual diagnosis and know what you’re dealing with – that’s just the beginning! Finding the root cause of your disease(s) is imperative if you’re ever truly going to achieve healing.

After watching the docuseries “Betrayal – The Autoimmune Disease Solution They’re Not Telling You” (CLICK to watch for FREE), Dr. Tom O’Bryan generously shared a FREE online resource that sadly has been discontinued.

Since the online tool disappeared, I’ve been searching feverishly to find something equivalent to share with you, because it was a HUGE help to me on my healing journey.

Fortunately, I’ve managed to cobble together some information that will help you gather important information you can share with your Functional Medicine Practitioner. Trust me … they’ll be very impressed that you’ve taken the time to put the effort into this.

The process will help you to understand where your health issues started, and in turn you’ll help your health-care team to start finding solutions faster!

When I say “effort,” I really do mean it, you’ll need to dig deep and gather every stitch of information you can – I could save you hundreds, if not thousands of dollars and shave months or years off of your quest for better health!

While the Living Matrix program no longer exists, Functional Medicine Practitioners still use the same process of establishing your health timeline, so keep reading, it’s a powerful process!

The original program presented questions about various life events, health issues, family history and more. PLUS you were able to add your own life events that you feel may have bearing like stressful events, antibiotic use, food poisoning episodes or major flu that may have emptied your gut of all the good bacteria.

MyTimeline^TM was a powerful tool that enabled you to easily document the unfolding phenomena that lead to ill health – a process that often occurs over many years, perhaps even a lifetime. It gave you and your practitioner the “Big Picture” so you could take the necessary steps to build back your health.

What is the importance of MyTimeline^TM?

Illness and disease do not appear overnight. They develop over time. Yet our healthcare system is not set up to accommodate this obvious fact. We pool together a pattern of symptoms, put a name on it, and call it a disease. Then, a one-size fits-all protocol is applied. When you come in with breathing problems and get a diagnosis of asthma, you get a prescription for an inhaler to help you breathe better. But what about the answers to questions “Why did I develop asthma?” or “What do I do to reduce my need for the medication?” It is the equivalent of focusing on and treating the exhaust pipe when your car begins spewing black smoke. Of course we want to feel better and need our symptoms addressed. But the bigger picture – the accumulation of all the small events that have occurred – facilitates the understanding of where the disease has come from.

Documenting the actions, events, and environmental influences that have occurred in your life allows for the construction of meaning and a “Big Picture” view of how your body got to where it is today. This opens up a conversation between you and your practitioner. MyTimeline^TM helps you and your practitioner work together, evaluate holistically, look for patterns, and find correlations/triggers/mediators. Each of us has a unique history that accumulates over time and holds the clues that can contribute significantly to creating a personalized plan to get you back to the health you want.

Create Your Own Timeline!

In the original Living Matrix program plotted everything for you – it was amazing! It’s terribly unfortunate that it’s not available, but there’s no point crying over spilled coconut milk, so we’re going to kick it up old school and keep going!

Overall, it was designed to help you think not only about your symptoms and issues – but just as importantly – when they may have occurred. It asked about key events in your life so that you could begin to recognize the patterns and see the “Big Picture” of the relationships between life events, symptoms, and diagnoses.

Since the process is rather in-depth, I’ve created a separate post so things don’t get messy or confusing here. Follow this link to create your own timeline, but keep reading to learn what to do with that information once you have it compiled.

What’s Next?

If you’re not finding your traditional doc to be of much help on your journey of discovery and healing, I wouldn’t say I’m surprised. Traditional medicine is really “sick care,” not “health care” and their training involves very little actual instruction about the holistic care of the human body – they assess, diagnose and prescribe – yes, the old band-aid on a battleship approach, sadly.

So, what’s next then? Well, if you watch the docuseries/talks that I mentioned above, you’ll no doubt be interested to learn more about Functional Medicine and their approach to treatment. One phrase that sticks with me that I read about Functional Medicine is this, “Find the cause, fix the cause, feel normal again.”

What is Functional Medicine?

It’s a combination of holistic care and conventional medicine – to me a perfect collaboration! My Functional Medicine Doctor includes conventional medical testing with her practice but takes the time to search for the root of the problem so we can fix that – not just put a band-aid on the symptoms.

The Institute for For Functional Medicine describes it this way:

Functional Medicine addresses the underlying causes of disease, using a systems-oriented approach and engaging both patient and practitioner in a therapeutic partnership. It is an evolution in the practice of medicine that better addresses the healthcare needs of the 21st century. By shifting the traditional disease-centered focus of medical practice to a more patient-centered approach, Functional Medicine addresses the whole person, not just an isolated set of symptoms. Functional Medicine practitioners spend time with their patients, listening to their histories and looking at the interactions among genetic, environmental, and lifestyle factors that can influence long-term health and complex, chronic disease. In this way, Functional Medicine supports the unique expression of health and vitality for each individual.
– See more at: https://www.functionalmedicine.org/

So – if you or a loved one is dealing with a chronic illness and you’re struggling to find answers, I’d highly recommend seeking out a Functional Medicine Practitioner (click here to find one).